Package: jointseg 1.0.2

jointseg: Joint Segmentation of Multivariate (Copy Number) Signals

Methods for fast segmentation of multivariate signals into piecewise constant profiles and for generating realistic copy-number profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies. The methods are described in Pierre-Jean, Rigaill and Neuvial (2015) <doi:10.1093/bib/bbu026>.

Authors:Morgane Pierre-Jean [aut, cre], Pierre Neuvial [aut], Guillem Rigaill [aut]

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Bug tracker:https://github.com/mpierrejean/jointseg/issues

On CRAN:

25 exports 6 stars 1.71 score 3 dependencies 2 dependents 43 scripts 330 downloads

Last updated 6 years agofrom:5b7ab68d33. Checks:OK: 9. Indexed: yes.

Exports:anotherBkpbinMissingValuesdefaultWeightsdoCBSdoDynamicProgrammingdoGFLarsdoPSCBSdoPSCNdoRBSestimateSdFpsngetCopyNumberDataByResamplinggetTpFpjointSegleftMultiplyByInvXAtXAleftMultiplyByXtmodelSelectionmultiplyXtXBySparseoneBkpplotSegpruneByDPPSSegrandomProfilesegmentByGFLarssegmentByRBS

Dependencies:acnrDNAcopymatrixStats