Description of the annotated data sets | Session information
Package: acnr 0.3.2
acnr: Annotated Copy-Number Regions
This data package provides SNP array data from different types of copy-number regions. These regions were identified manually by the authors of the package and may be used to generate realistic data sets with known truth.
Authors:
acnr_0.3.2.tar.gz
acnr_0.3.2.zip(r-4.7)acnr_0.3.2.zip(r-4.6)acnr_0.3.2.zip(r-4.5)
acnr_0.3.2.tgz(r-4.6-any)acnr_0.3.2.tgz(r-4.5-any)
acnr_0.3.2.tar.gz(r-4.7-any)acnr_0.3.2.tar.gz(r-4.6-any)
acnr_0.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
acnr/json (API)
| # Install 'acnr' in R: |
| install.packages('acnr', repos = c('https://mpierrejean.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mpierrejean/acnr/issues
Last updated from:d65dbfa703. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 141 | ||
| source / vignettes | OK | 174 | ||
| linux-release-x86_64 | NOTE | 138 | ||
| macos-release-arm64 | NOTE | 90 | ||
| macos-oldrel-arm64 | NOTE | 94 | ||
| windows-devel | NOTE | 86 | ||
| windows-release | NOTE | 81 | ||
| windows-oldrel | NOTE | 81 | ||
| wasm-release | OK | 104 |
Exports:getMinorMajorCopyNumberslistDataSetslistTumorFractionsloadCnRegionData
Dependencies:
Annotated data sets contained in the acnr package
Last update: 2016-12-15
Started: 2016-11-23
Autocorrelation plots
Introduction | Autocorrelation tests | Discussion | TODO | Session information
Last update: 2016-12-14
Started: 2016-12-13
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Annotated Copy-Number Regions | acnr-package acnr |
| Get minor and major copy number labels from region annotation labels | getMinorMajorCopyNumbers |
| Annotated copy-number regions from the GEO GSE11976 data set. | GSE11976_CRL2324 |
| Annotated copy-number regions from the GEO GSE13372 data set. | GSE13372_HCC1143 |
| Annotated copy-number regions from the GEO GSE29172 (and GSE26302) data sets. | GSE29172_H1395 |
| List available data sets | listDataSets |
| List of available tumor fractions for a data set | listTumorFractions |
| loadCnRegionData | loadCnRegionData |
