{
  "_id": "6a154743acfb0bcc41d57ae6",
  "Package": "acnr",
  "Type": "Package",
  "Title": "Annotated Copy-Number Regions",
  "Version": "0.3.2",
  "Date": "2017-01-09",
  "Author": "Morgane Pierre-Jean and Pierre Neuvial",
  "Maintainer": "Morgane Pierre-Jean <mpierrejean.pro@gmail.com>",
  "Description": "This data package provides SNP array data from different\ntypes of copy-number regions. These regions were identified\nmanually by the authors of the package and may be used to\ngenerate realistic data sets with known truth.",
  "License": "LGPL (>= 2.1)",
  "RoxygenNote": "5.0.1",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/mpierrejean/acnr",
  "BugReports": "https://github.com/mpierrejean/acnr/issues",
  "Repository": "https://mpierrejean.r-universe.dev",
  "Date/Publication": "2021-11-18 07:46:06 UTC",
  "RemoteUrl": "https://github.com/mpierrejean/acnr",
  "RemoteRef": "HEAD",
  "RemoteSha": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 07:05:27 UTC",
    "User": "root"
  },
  "MD5sum": "23749265469c50b689845eb5f4cebe70",
  "_user": "mpierrejean",
  "_type": "src",
  "_file": "acnr_0.3.2.tar.gz",
  "_fileid": "00c22699826d765f6f4082e017b3889410fb22c4b8f6d6b3f713f2148de18b57",
  "_filesize": 7137425,
  "_sha256": "00c22699826d765f6f4082e017b3889410fb22c4b8f6d6b3f713f2148de18b57",
  "_created": "2026-05-26T07:05:27.000Z",
  "_published": "2026-05-26T07:09:55.810Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77824113523,
      "time": 130,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7210876311"
    },
    {
      "job": 77824113540,
      "time": 138,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7210878296"
    },
    {
      "job": 77824113658,
      "time": 232,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7210893624"
    },
    {
      "job": 77824113600,
      "time": 150,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7210874355"
    },
    {
      "job": 77823730618,
      "time": 177,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7210839775"
    },
    {
      "job": 77824113531,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7210869253"
    },
    {
      "job": 77824113576,
      "time": 117,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7210872538"
    },
    {
      "job": 77824113634,
      "time": 85,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7210863140"
    },
    {
      "job": 77824113548,
      "time": 85,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7210863321"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/mpierrejean/acnr",
  "_commit": {
    "id": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
    "author": "Morgane Pierre-Jean <mpierrejean.pro@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "update e-mail address",
    "time": 1637221566
  },
  "_maintainer": {
    "name": "Morgane Pierre-Jean",
    "email": "mpierrejean.pro@gmail.com",
    "login": "mpierrejean",
    "description": "",
    "uuid": 11524264
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "R.utils",
      "role": "Suggests"
    },
    {
      "package": "xtable",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "mpierrejean",
  "_selfowned": true,
  "_usedby": 3,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "pneuvial",
      "count": 37,
      "uuid": 7895899
    },
    {
      "user": "mpierrejean",
      "count": 2,
      "uuid": 11524264
    }
  ],
  "_userbio": {
    "uuid": 11524264,
    "type": "user",
    "name": "Morgane Pierre-Jean"
  },
  "_downloads": {
    "count": 334,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/acnr"
  },
  "_devurl": "https://github.com/mpierrejean/acnr",
  "_searchresults": 19,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/acnr.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mpierrejean/acnr",
  "_realowner": "mpierrejean",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2.4",
      "date": "2014-11-19"
    },
    {
      "version": "1.0.0",
      "date": "2017-04-18"
    }
  ],
  "_exports": [
    "getMinorMajorCopyNumbers",
    "listDataSets",
    "listTumorFractions",
    "loadCnRegionData"
  ],
  "_help": [
    {
      "page": "acnr-package",
      "title": "Annotated Copy-Number Regions",
      "topics": [
        "acnr-package",
        "acnr"
      ]
    },
    {
      "page": "getMinorMajorCopyNumbers",
      "title": "Get minor and major copy number labels from region annotation labels",
      "topics": [
        "getMinorMajorCopyNumbers"
      ]
    },
    {
      "page": "GSE11976_CRL2324",
      "title": "Annotated copy-number regions from the GEO GSE11976 data set.",
      "topics": [
        "GSE11976_CRL2324"
      ]
    },
    {
      "page": "GSE13372_HCC1143",
      "title": "Annotated copy-number regions from the GEO GSE13372 data set.",
      "topics": [
        "GSE13372_HCC1143"
      ]
    },
    {
      "page": "GSE29172_H1395",
      "title": "Annotated copy-number regions from the GEO GSE29172 (and GSE26302) data sets.",
      "topics": [
        "GSE29172_H1395"
      ]
    },
    {
      "page": "listDataSets",
      "title": "List available data sets",
      "topics": [
        "listDataSets"
      ]
    },
    {
      "page": "listTumorFractions",
      "title": "List of available tumor fractions for a data set",
      "topics": [
        "listTumorFractions"
      ]
    },
    {
      "page": "loadCnRegionData",
      "title": "loadCnRegionData",
      "topics": [
        "loadCnRegionData"
      ]
    }
  ],
  "_readme": "https://github.com/mpierrejean/acnr/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "acnr.Rmd",
      "filename": "acnr.html",
      "title": "Annotated data sets contained in the acnr package",
      "author": "M. Pierre-Jean, P. Neuvial",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Description of the annotated data sets",
        "Session information"
      ],
      "created": "2016-11-23 14:38:38",
      "modified": "2016-12-15 23:33:27",
      "commits": 2
    },
    {
      "source": "AutocorrelationVignette.Rmd",
      "filename": "AutocorrelationVignette.html",
      "title": "Autocorrelation plots",
      "author": "Morgane Pierre-Jean and Pierre Neuvial",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Autocorrelation plots",
        "Autocorrelation tests",
        "Discussion",
        "TODO",
        "Session information"
      ],
      "created": "2016-12-13 09:26:18",
      "modified": "2016-12-14 16:17:26",
      "commits": 2
    }
  ],
  "_score": 5.232996110392154,
  "_indexed": true,
  "_nocasepkg": "acnr",
  "_universes": [
    "mpierrejean"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.2",
      "date": "2026-05-26T07:07:26.000Z",
      "distro": "noble",
      "commit": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
      "fileid": "bd9e30c18365c29ebb3e09e9b5b0af7366e82917b65c68355ea4d05771a8e158",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3.2",
      "date": "2026-05-26T07:07:34.000Z",
      "distro": "noble",
      "commit": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
      "fileid": "d5995c61e5eb101f5c74b4337353673f450907a0eaaf5daf63ac5e1fff671d51",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.2",
      "date": "2026-05-26T07:08:27.000Z",
      "commit": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
      "fileid": "20881646dfff7ab528d7406a41de91b1db4e7f5d39d10524f5f6897cfd769d49",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.3.2",
      "date": "2026-05-26T07:07:24.000Z",
      "commit": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
      "fileid": "d9f4b81bb8052006dd316161b6217acfde0bef407ddbc9fb01c1ce8c39265ce7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.2",
      "date": "2026-05-26T07:07:26.000Z",
      "commit": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
      "fileid": "674e6a03576b9142194a75ccd22d652b15bf619aef602aa903e03f00b40ed809",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.2",
      "date": "2026-05-26T07:06:58.000Z",
      "commit": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
      "fileid": "2a9a89be10512f5a39973947b2f19cdbb1d53053fd80b34c4ccfdcda4138d4fc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.2",
      "date": "2026-05-26T07:06:36.000Z",
      "commit": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
      "fileid": "8d4ede1b62445a735b58262b701d40f566d6201d884354fecf7f93f96a1df929",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.3.2",
      "date": "2026-05-26T07:06:35.000Z",
      "commit": "d65dbfa70315c6f8a2caa6f7077c4c19ce24190a",
      "fileid": "efaf28e1a8285b159055a87ebfc3c6e02d339e341d2fb59d1e348a2d8a90bcf0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mpierrejean/actions/runs/26437521808"
    }
  ]
}